PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70613.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 206aa    MW: 22558.1 Da    PI: 9.8078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70613.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-121357554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                + ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  EPS70613.1 13 NLMAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 57
                5589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-13661No hitNo description
PROSITE profilePS5088816.05857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-141463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-101457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-161570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.80E-7135195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
DSKGKKKGQP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLKELLQK  60
INDLHNELES TPGGGSSTAT PGVNNFYPLT PTGPGLPPRI KEELCPAAFA TPMSSPSGQP  120
ARVEVRLREG RAVNIHMFCG RRPGLLLSTL RAMDNMGLDV QQAVISCFNG FVLDVFRAEQ  180
CGEGMELNPE QIKAVLLESA GFHGIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422KKKGQPAKNLMAERRRRKK
21623ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073188.11e-120PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-102ICE1_ARATH; Transcription factor ICE1
TrEMBLS8E4C81e-151S8E4C8_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc06g068870.2.11e-115(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27032452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.46e-94bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]